RESOURCES – Roukos LAB

RESOURCES

We provide the tools to perform paired end or single read BreakTag raw data processing

Predict blunt rate of Cas9 targets using the XGBoost model trained with Chakrabarti’s

Supporting code and data for the Nature Protocols manuscript

Type II topoisomerases control 3D chromatin structure at positively supercoiled regions at boundaries of active chromatin with the nuclear lamina

A companion package to the BreakTag protocol for the identification of CRISPR offtargets

Some useful tools/scripts commonly used in our lab.